Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVSSSLAPCIGYVRG---GG---A------------VPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSIS----GVN-----PNNAAALPGKCGVNIPYKISASTNCATVK
1W2Q Chain:A ((22-114))
------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-----N-TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30088 for 398 contacts (-75.6/contact) +
2D Compatibility (PS) -6578 + (NN) 135 + (LL) 1632
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -37949.0 ( -95.35 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: