Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVASSLAPCISYLQK----GGVP----------SASCCSGVKALNSAASTTADRKTACNCLKNLAGP-K------SG----INEGNAASLPGKCKVNVPYKISTFTNCANIK
2LVF Chain:A ((16-101))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14886 for 335 contacts (-44.4/contact) +
2D Compatibility (PS) -6241 + (NN) -497 + (LL) 1924
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -25100.0 ( -74.93 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: