Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSAIQLSPCLGAITSNSAPSTLCCSRIREQKPCLCTYLKNPTLRNYVNSPGAKKVARTCGVPYPKC
M040 Chain:A ((1-96))
VTCSAIQLSPCLGAITSNSAPSTLCCSRIREQKPCLCTYLKNPTLRNYVNSPGAKKVARTCGVPYPKC
General information:
TITO was launched using:
RESULT:
Template:
M040.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33280 for 447 contacts (-74.5/contact) +
2D Compatibility (PS) -7076 + (NN) -3832 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 3400
Total energy: -57188.0 ( -127.94 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_M040.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M040-query.scw
PDB file :
Tito_Scwrl_M040.pdb
: