Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSAAQCKEERRLGLNACKPVVYGRPPSPQCCQRIRVTHIECVCPVVTPKLAALIDVNRAIRVIEGCGRRVPRHFKCGSKLSPPPIHMRFLQADL
M040 Chain:A ((3-133))
APSAAQCKEERRLGLNACKPVVYGRPPSPQCCQRIRVTHIECVCPVVTPKLAALIDVNRAIRVIEGCGRRVPRHFKCGSK---------------
General information:
TITO was launched using:
RESULT:
Template:
M040.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2898 for 553 contacts (-5.2/contact) +
2D Compatibility (PS) -7677 + (NN) 1556 + (LL) 892
1D Compatibility (HY) 4000 + (ID) 250
Total energy: -4377.0 ( -7.92 by residue)
QMean score : -0.074
(partial model without unconserved sides chains):
PDB file :
Tito_M040.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M040-query.scw
PDB file :
Tito_Scwrl_M040.pdb
: