Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YGPCGKHDIEKEAEKLAPCTKAAQY---LEA----------PVSKRCCTVMEKKLKNPDCLCAIMFSHTAR------SA-G----VNPEVAVTIPKRCNIPVRPVGHKCGAFPLV
2LVF Chain:A ((16-101))
-------------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15842 for 349 contacts (-45.4/contact) +
2D Compatibility (PS) -6401 + (NN) -1340 + (LL) 1224
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -24309.0 ( -69.65 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: