Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDCNGLVTTVVSQCSGSYVNGSPPSAGCCGAARAVSDGCLCPKVTPQIADAVNKQRIQAMASACNRPLPRTCGALQFPSRK
M040 Chain:A ((2-116))
QDCNGLVTTVVSQCSGSYVNGSPPSAGCCGAARAVSDGCLCPKVTPQIADAVNKQRIQAMASACNRPLPRTCGALQFPSRK
General information:
TITO was launched using:
RESULT:
Template:
M040.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2504 for 512 contacts (-4.9/contact) +
2D Compatibility (PS) -8120 + (NN) -3781 + (LL) 0
1D Compatibility (HY) 4800 + (ID) 250
Total energy: -9855.0 ( -19.25 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_M040.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M040-query.scw
PDB file :
Tito_Scwrl_M040.pdb
: