Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGV--DNKYYTLSDCCGKNGFIVMFICNHCPYVQS-IISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKENKFTFPYLIDSKQE-----VAKEYGAVCTPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
3EYT Chain:A ((2-155))
----------NAMKAPELQIQQWFNSATDLTLADLRG-KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE-DKVAVLGLHTVFEHH-EAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVS-----------ELLLGAEIATLLGEAAP-------------------
General information:
TITO was launched using:
RESULT:
Template:
3EYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116568 for 1078 contacts (-108.1/contact) +
2D Compatibility (PS) -15992 + (NN) -9254 + (LL) 1972
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -142392.0 ( -132.09 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_3EYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EYT-query.scw
PDB file :
Tito_Scwrl_3EYT.pdb
: