Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGEVKLCRGIDKSKDQSYFLFAT---T-KEQLKLLRFPLGGFYKCNVRKLARYFSLPIS--EKPDSQDICFVSENYSKTIAKLAPQSIQKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWLEQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS |
| 3VRH Chain:A ((46-249)) | ----------------KDERILVAVSGGKDSAVTAYVLKKLGYNIECLHINLGISGY-----------SEKSEEYAKKQCKLIGAPLHIVRIKEILGYG-I----GEVK--TRRPPCSYCGL-TKRYIMNKFAYDNGFDAIATGHNLDDEASFLLNNILHWNT---E--YLAKGGPILPQQGKFIKKVKPLYEVTEREVVAYALAVGLEYIVEECPY------TTLDMKGVLNEL--EEKRPGTKFNFVRGYLKKKKLFEPKECKICRMPSSGDICAFCKFWGLKKEINFKVSSTDEEPFG---------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VRH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75802 for 1481 contacts (-51.2/contact) +
2D Compatibility (PS) -20402 + (NN) -3668 + (LL) 8032
1D Compatibility (HY) -4400 + (ID) 2050
Total energy: -98290.0 ( -66.37 by residue)
QMean score : 0.383
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