Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSGNVLLTFCSNSGYLRSDMNAVKNLVIWLLIIVITAMFIDSQKDRLRNRFLSTFLPYRGRIQDSRSVEFTKSYDGHFYIQAQVNGHNITFLLDTGATDIVLSQKDALYAGIKLQDIQDFKIYETAKGQIRAGVVQIPQIKIGNFLINDVQASVNTHSMPHSLLGMSFLKYF--HFTIRGNKLILYCNSTY
3SLZ Chain:A ((19-124))
--------------------------------------------------------------------------PPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLS---D----KSAWVQGATGGKRYRWTTDRKVHLATGKVTH-SFLHVPD-CPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQ
General information:
TITO was launched using:
RESULT:
Template:
3SLZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76756 for 712 contacts (-107.8/contact) +
2D Compatibility (PS) -11422 + (NN) -2272 + (LL) 6248
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -88102.0 ( -123.74 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_3SLZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SLZ-query.scw
PDB file :
Tito_Scwrl_3SLZ.pdb
: