Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNKYYDSNNIFAQILRGELPCKKVYEDEDVLAFYDKYPDAPVHILVVPKSQYISYDDFIFKASAE--EIVGFFKTVREITYKYNLEKTGYRLVTNCGENGEQVVPHFHMHILGGKRLGKHVNL
4NJZ Chain:B ((52-158))
-------APTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPI----PRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG-
General information:
TITO was launched using:
RESULT:
Template:
4NJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69964 for 733 contacts (-95.4/contact) +
2D Compatibility (PS) -11423 + (NN) -8420 + (LL) 292
1D Compatibility (HY) -7200 + (ID) 2250
Total energy: -98965.0 ( -135.01 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4NJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NJZ-query.scw
PDB file :
Tito_Scwrl_4NJZ.pdb
: