Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNNIVIVGLQWGDEGKGKIVDYLSENADTVVRFQGGNNAGHTIVVDDEVYKLNLLPSAVLRTGKISIIGNGVALDPYALISEIESLRVKGM---DINPNNLMVSESCPLILSVHKEKEKLFEDLNGNHKIGTTNKGIGPCYEDKVGRRAIRLCDLEN-ADELNKRLDTLLNYHNAIRKGLSYRVIKKEEMLREIEEIAEKIIPYRKPVWKILNDFVKE-GKKIIFEGAQGTFLDIDHGTYPFVTSSNTIASQVMTGSGL--SSNAYVIGVAKAYTTRVGNGPFPTEQRNEVGNSLFTIGKELGTVSNRKRRCGWFDAVLVRQAVQLSGVSSIILTKLDVLDSFDKIKICTGYQYSGKIYDYLPASRSIQEELEPIYEEFPGWKENTQGEKLAEKLPVNLIKYVKRVEELIGIPIHLISAGPKREDVIKLKDFKFSESVLVSY |
2V40 Chain:A ((31-458)) | NRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGW-EKRLIISDRAHIVFDFHQAADGIQEQQ---------KKGIGPVYSSKAARSGLRMCDLVSDFDGFSERFKVLANQYKSIYPTL---EIDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFTEIKVGVAYKLDGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNARAFKELPVNAQNYVRFIEDELQIPVKWIGVGKSRESMIQLF------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188177 for 3500 contacts (-53.8/contact) +
2D Compatibility (PS) -44390 + (NN) -16197 + (LL) 892
1D Compatibility (HY) -32800 + (ID) 8550
Total energy: -289222.0 ( -82.63 by residue)
QMean score : 0.547
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