Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKRTQYNNLVSSYARALFLVSENK-----LSVVRKEVEFLLAFFKSQHDVFIYLSHPMISFARKKEVIFSVNEHLSESLVKFIAVIFANKRSNLLISVLEKFLTLVRESENELEITIK---SAETLSESNIKIITES-----LSFLGKIVRVDNAVDPSILGGFIVKYGFNLIDASLKSYLDRLVDLSKVEILKTRNFI
1JXP Chain:A ((3-179))
ITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSK-TLAGPKGPITQMYTNVDQDLVGWQAP--PGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCT--RGVAKAVDFVPVESMETTM-------------------
General information:
TITO was launched using:
RESULT:
Template:
1JXP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45203 for 1166 contacts (-38.8/contact) +
2D Compatibility (PS) -16540 + (NN) 8595 + (LL) 2772
1D Compatibility (HY) -2800 + (ID) 1350
Total energy: -54526.0 ( -46.76 by residue)
QMean score : 0.074
(partial model without unconserved sides chains):
PDB file :
Tito_1JXP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JXP-query.scw
PDB file :
Tito_Scwrl_1JXP.pdb
: