Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDIENNLQDLKRKFNYIERKLENPTNLSQKEFINLSKEYSELRPIIKIINEYDTLKKEILDLEEIIKDENSEYDIKELAKEEFFEKQKVLLPQVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAA----MLFRMYQK-----YAERRNWKFEPISISSTG-----IGGYKEASALINGTEVFARLKFESGVHRVQRVPETE---SSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVN---TTDSAVRVTHLPTE--MVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEIERSTMRKSQIGSGDRSERIRTYNFPQ-----SRITDHRINLTSHQLEQIIKEGELDEFIEVLISRNEAERLAGES |
| 3LRV Chain:A ((11-343)) | -----------------APKWPILKNLELLQAQNYSRN---------------------------IKT----FPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR--TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY-----------SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIGTVTYDIDDS--GKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLADFTDMDVVCGD--GGIAAILKTNDSFNIVALTP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LRV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 46647 for 2127 contacts (21.9/contact) +
2D Compatibility (PS) -30037 + (NN) 5469 + (LL) 5424
1D Compatibility (HY) -14400 + (ID) 2850
Total energy: 10253.0 ( 4.82 by residue)
QMean score : 0.118
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