Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGT---RSLFVNFIGKLNDKSNEITSKLVICPPFTSLPGNIEL-----NSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERT---HETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRLPIHGE-----YTVAYEPIWAIGTGHV----PSNNAIAEVIEVIQSYTSKK-----HVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
3UWU Chain:B ((13-258))
---IIAGNWKMNKTVQEAKDFVNALPTLPD-SKEVES--VICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA----
General information:
TITO was launched using:
RESULT:
Template:
3UWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131977 for 1807 contacts (-73.0/contact) +
2D Compatibility (PS) -24029 + (NN) -8836 + (LL) 1096
1D Compatibility (HY) -14800 + (ID) 4750
Total energy: -183296.0 ( -101.44 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3UWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWU-query.scw
PDB file :
Tito_Scwrl_3UWU.pdb
: