Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFGLHHFNYTLKKNK--NDVAKALFE--------------YGAKIDVDYVEERLIISGTTEYSQSTVEILLPYASI
2NYS Chain:A ((35-102))
---GDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTETGFEI------GLSFSDTPEKLVIPYNAI
General information:
TITO was launched using:
RESULT:
Template:
2NYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3729 for 254 contacts (-14.7/contact) +
2D Compatibility (PS) -5440 + (NN) 1088 + (LL) 1016
1D Compatibility (HY) 0 + (ID) 350
Total energy: -7415.0 ( -29.19 by residue)
QMean score : 0.084
(partial model without unconserved sides chains):
PDB file :
Tito_2NYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYS-query.scw
PDB file :
Tito_Scwrl_2NYS.pdb
: