Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKEKLFYTIGEVAEELHLEQHVLRFWESQFRQI---KPIKR-K--------GRRLYDHKCIEVIKKIKYMLYDKGYTIKGVQKEFDNNIKSSCNFGNLLPQLIDLRDYLINKINSEKSNEQL
2KVV Chain:A ((6-68))
--FNEEWMVEKALMVRTGLGARQIESYRQ--GAWIEGVHFKRVSPSGEKTLRGTTWYNYPEINKFIRDSLEHHHHHH----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24043 for 301 contacts (-79.9/contact) +
2D Compatibility (PS) -5095 + (NN) 1468 + (LL) 3008
1D Compatibility (HY) -2000 + (ID) 300
Total energy: -26962.0 ( -89.57 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2KVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KVV-query.scw
PDB file :
Tito_Scwrl_2KVV.pdb
: