Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS |
| 1PDN Chain:C ((14-59)) | ----NGRPLPNNIRLKIVEMAAD-GIRPCVISRQL-----RVSHGCVSKILNRYQE------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39114 for 269 contacts (-145.4/contact) +
2D Compatibility (PS) -4551 + (NN) 2229 + (LL) 14332
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -29104.0 ( -108.19 by residue)
QMean score : 0.536
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