Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIIYCITKA-----DNGGAQTHLIQLANHFCV-HHDVYVIVGN-HGPM--IEQLDARVNVIILEHLVG-PID---FKQDI-LAVKVLAQLF--SKIKPDVIHLHSSKAGTVGRIAKFISKSKDTRVVFTAHGWAFTEGV-KPAKKFLYLVIEKLMSCITDSIICVSDFDKQLALKY-RFNRLKLTTIHNGIADVPAVKQTLKSQSHNNIGEVVGMLPNKQDLQINAPTKHQFVMIARFAYPKLPQNLIAAIEILKLHNS---NHAHFTFIGDGPTLNDCQQQVVQAGLENDVTFLGNVINA--SHLLSQYDTFILISKHEGLPISIIEAMATGLPVIASHVGGISELVAD--NGICMMNNQPETIAKVLEKYLIDSDY-IKMSNQSRKRYLECFTEEKMIKEVEDVYNGKSTQ |
| 3C48 Chain:A ((21-427)) | MRVAMISMHTSPLQQ---GMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWR---IPLIHTAHTLAAVKNSYDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPG------TERSR--------RE--LGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALF--DRDPDRNLRVIICGGPS--DTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHA-RTFSWAATAAQLSSLYNDAIA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257819 for 3055 contacts (-84.4/contact) +
2D Compatibility (PS) -39715 + (NN) -21290 + (LL) 1312
1D Compatibility (HY) -6800 + (ID) 3150
Total energy: -327462.0 ( -107.19 by residue)
QMean score : 0.536
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