Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKAHKIFWLNLAAIIIISIVVSGGMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDGHDNPHYENN-------DQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDRKDATDSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTTDYYNLSGKLSNDNPNVKQLKRRYNIPSNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGKNQIIYKESLTYNKLSEH |
4GJC Chain:A ((178-234)) | ---------------------------------------------------------LGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISG------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GJC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1456 for 178 contacts (-8.2/contact) +
2D Compatibility (PS) -5291 + (NN) -2117 + (LL) 12204
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -460.0 ( -2.58 by residue)
QMean score : 0.304
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