Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVVNLIMTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDN-----------LKSDEKELIKLRKEVQHLKMEHDVLKQILKLI---------
2LVS Chain:A ((1-105))
-------------MPSVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVYEIARQLGRPESTIYYALKKLGLKLE
General information:
TITO was launched using:
RESULT:
Template:
2LVS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5499 for 505 contacts (-10.9/contact) +
2D Compatibility (PS) -8977 + (NN) -4795 + (LL) 1548
1D Compatibility (HY) 1200 + (ID) 550
Total energy: -17073.0 ( -33.81 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_2LVS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVS-query.scw
PDB file :
Tito_Scwrl_2LVS.pdb
: