Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNEIQILNNGYPMPSVGLGVYKISDEDMTKVVNA-AIDAGYRAFDTAYFYDNEASLGRALKDNGVDREDLFITTKLWNDYQGYEKTFEYFNKSIENLQTDYLDLFLIHWPCEADGLFLETYKAMEELYEQGKVKAIGVCNFNVHHLEKLMAQSSIKPMVNQIEVHPYFNQQELQEFCDRHDIKVTAWMPLMRNRGLLDNPVIVKIAEKYHKTPAQVVLRWHLAHNRIIIPKSQTPKRIQENIDILDFNLELTEVAEIDALDRNARQGKNPDDVKIGDLK
1VBJ Chain:B ((14-275))
-------LSNGVMMPVLGFGMWKLQDGNEAETATMWAIKSGYRHIDTAAIYKNEESAGRAIASCGVPREELFVTTKLWNSDQGYESTLSAFEKSIKKLGLEYVDLYLIHWPGKDK--FIDTWKAFEKLYADKKVRAIGVSNFHEHHIEELLKHCKVAPMVNQIELHPLLNQKALCEYCKSKNIAVTAWSPLGQGH-LVEDARLKAIGGKYGKTAAQVMLRWEIQAGVITIPKSGNEARIKENGNIFDFELTAEDIQVIDGMNAGHRYGPDPE--------
General information:
TITO was launched using:
RESULT:
Template:
1VBJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121804 for 2252 contacts (-54.1/contact) +
2D Compatibility (PS) -28588 + (NN) -16727 + (LL) 1144
1D Compatibility (HY) -24800 + (ID) 6200
Total energy: -196975.0 ( -87.47 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1VBJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VBJ-query.scw
PDB file :
Tito_Scwrl_1VBJ.pdb
: