Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGP---VTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
4N6B Chain:D ((153-254))
-------------------------------------------------------VDIHPAARIGKGILFD--HATGVVVGETAVIGNNVSILHHVTLGGT----GDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARL-----
General information:
TITO was launched using:
RESULT:
Template:
4N6B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86535 for 736 contacts (-117.6/contact) +
2D Compatibility (PS) -10617 + (NN) -4292 + (LL) 6400
1D Compatibility (HY) -6800 + (ID) 1900
Total energy: -103744.0 ( -140.96 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_4N6B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6B-query.scw
PDB file :
Tito_Scwrl_4N6B.pdb
: