Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4K5W Chain:A ((7-141))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTMKFMYKGQPMTFRLLLVDTPETKHP---VEKYGPEASAFFKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
4K5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46290 for 1052 contacts (-44.0/contact) +
2D Compatibility (PS) -14101 + (NN) -3875 + (LL) 5924
1D Compatibility (HY) -15600 + (ID) 6350
Total energy: -80292.0 ( -76.32 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4K5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K5W-query.scw
PDB file :
Tito_Scwrl_4K5W.pdb
: