Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENF---VTHAKNGYYDGITFHRVINDFMIQGGDPTA-TGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
2CFE Chain:A ((16-161))
------------------------GTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV----------------------------TSWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSRIEIAKCGV--
General information:
TITO was launched using:
RESULT:
Template:
2CFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47631 for 1070 contacts (-44.5/contact) +
2D Compatibility (PS) -14912 + (NN) -6571 + (LL) 2756
1D Compatibility (HY) -8800 + (ID) 3700
Total energy: -78858.0 ( -73.70 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_2CFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFE-query.scw
PDB file :
Tito_Scwrl_2CFE.pdb
: