Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRQARPEDRFDIAKLVYMVWDDMELELVKHLPKDMVLDAIEKSCVDATYRTFYQHILVYEVENKVAGCIISYSGENELKYEKAWEL----LDLPEEIKQYGTPLPVKEAKDDEYYIETIATFAAYRGRGIATKLLTSLLES---NTHVKWSLNCDINNEAALKLYKKVGFISDGQIELYKHMYHHLIVK
1U6M Chain:A ((3-188))
LIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVYEHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFI----EEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLYNHMQKE
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113855 for 1340 contacts (-85.0/contact) +
2D Compatibility (PS) -19145 + (NN) -8572 + (LL) -52
1D Compatibility (HY) -13200 + (ID) 2950
Total energy: -157774.0 ( -117.74 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: