Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGEN-GFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
1B78 Chain:A ((10-193))
--KIYFATGNPNKIKEANIILKDLKDVEIEQI--KISYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQETI-----GNEGILKLLEGKDNRNAYFKTVIGYCDEN-GVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKKFLLDRI--
General information:
TITO was launched using:
RESULT:
Template:
1B78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73795 for 1435 contacts (-51.4/contact) +
2D Compatibility (PS) -20157 + (NN) -11872 + (LL) 864
1D Compatibility (HY) -13600 + (ID) 3000
Total energy: -121560.0 ( -84.71 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1B78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B78-query.scw
PDB file :
Tito_Scwrl_1B78.pdb
: