Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MINEQRLLNTFLELVQIDSETGNE---STIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTMNSTIEEGEVPKLYLTSHMDTVVPAINV--KPIVKDDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQI-PHGQIQFVITVGEESGLIGAKELNSEL-LDADFGYAIDASADV-GTTVVGAPTQMLISAKIIGKTAHAST-PKEGVSAINIAAKAISRMKLGQV-DEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELGGKAEVTVEQSYPGFKIND-NEAVVKIAQESARNL-GLSANTIISGGGSDGSIINTFGIPSV-ILGVGYEKIHT-TNERMPIKSLNLLASQVLEIIKIVARQSK |
1CG2 Chain:A ((17-392)) | --EQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAG--LVVGDNIVGKIKGR----GGKNLLLMSHMDTVYLKGILAKAPFRVEGDKAYGPGI----ADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQEEAKLADYVLSFEPTSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDKAKNLRFNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKL-PEADVKVIVTRGRPAFNAGEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGKPVIESLGLPGFGYHSDKAEYVDISAIPRRLYMAARLIMDLGAG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110282 for 3094 contacts (-35.6/contact) +
2D Compatibility (PS) -38855 + (NN) -12782 + (LL) 956
1D Compatibility (HY) -9200 + (ID) 4200
Total energy: -174363.0 ( -56.36 by residue)
QMean score : 0.517
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