Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVKTFYNGNTMPQIGLGTFRVENDENCMESVKYAIEQGYRSIDTAKVYGNEEQVGAGIRAGLESTGIAREDLFITSKLYFEDFGRENVAAAYEASLSRLGLKYLDLYLVHW-PGTNEAVMVDTWKGMEDLYKNNKAKNIGVSNFEPEHLEALLAQVSIKPVINQVEYHPYLTQHKLKLYLAAQHIVMESWSPLMNAQI---LNDETIKDIAQELGKSPAQVVLRWNVQHGVVIIPKSVTPNRISENFQIFDFELSDEQMTRIDGLNQDKRIGPDPKTFEG
4Q3M Chain:C ((8-265))
-------NNYEMPIIGLGTFRSKKND-AYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIK----DSNIPREEIFVTTKLWNTDQGYEKTLEAFNTSLKNLGLDYIDLYLIHWFKGYDNAL--STYRAFETLYEEGKVKAIGVSNFNVHHLMYLMENAKIPPMVNQVETHVTLQNHFLHDYCKKNNIQLEAYAPLMSHQIKDLLSNETMAKIAKKHDKTIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIRSVNTGKKI---------
General information:
TITO was launched using:
RESULT:
Template:
4Q3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107125 for 2137 contacts (-50.1/contact) +
2D Compatibility (PS) -27700 + (NN) -13726 + (LL) 1068
1D Compatibility (HY) -25600 + (ID) 5850
Total energy: -178933.0 ( -83.73 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_4Q3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q3M-query.scw
PDB file :
Tito_Scwrl_4Q3M.pdb
: