Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKMGLLVMAYGTPYKESDIEPYYTDI-------RHGKRPSEEELQDLKDRYEFIGGLSPLAGTTDDQADALVSALNKAYADVEFKLYLGLKHISPFIEDAVEQMHNDGITEAITVVLAPHYSSFSVGSYDKRADEEAAKYG-IQLTHVKHYYEQPKFIEYWTNKVNETLAQIPEEEHKDTVLVVSAHSLPKGLIEKNNDPYPQELEHTALLIKEQSNI-EHIAIGWQSEGNTGTPWLGPDVQDLTRDLYEKHQYKNFIYTPVGFVCEHLEVLYDNDYEC-KVVCDDIGANYYRPKMPNTHPLFIGAIVDEIKSIF-- |
| 1DOZ Chain:A ((1-309)) | SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKPE-------PEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFG-DPYPDQLHESAKLIAEGAGVS-EYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECK-VVTDDIGASYYRPEMPNAKPEFIDALATVVLKKLGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DOZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156175 for 2491 contacts (-62.7/contact) +
2D Compatibility (PS) -32406 + (NN) -11814 + (LL) 56
1D Compatibility (HY) -33200 + (ID) 9150
Total energy: -242689.0 ( -97.43 by residue)
QMean score : 0.546
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