Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ----
1X53 Chain:A ((1-145))
GSSGSSGIPTCKITLKETFLTSPEELYRVFTTQELVQAFT------HAPATLEADRGGKFHMVDGN-------VSGEFTDLVPEKHIVMKWRFKSWPEGHFATITLTFIDKNGETELCMEGRGIPAPEEERTRQGWQRY--------------YFEGIKQTFGYGASGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1X53.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35326 for 1041 contacts (-33.9/contact) +
2D Compatibility (PS) -14429 + (NN) 1298 + (LL) 1864
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -51343.0 ( -49.32 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1X53.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X53-query.scw
PDB file :
Tito_Scwrl_1X53.pdb
: