Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKSINHICFSVRNLNDSIHFYRDILLGKLLLTGKKTAYFELAGLWIALNEEKDIPRNEIHFSYTHIAFTIDDSEFKYWHQRLKDNNVNILEGRVRDIRDRQSIYFTDPDGHKLELHTGTLENRLNYYKEAKPHMTFYK
1NKI Chain:B ((1-127))
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQY--GGPAADYTHYAFGIAAADFARFAAQLRAHGVREWK---QNRSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAP-------
General information:
TITO was launched using:
RESULT:
Template:
1NKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58560 for 841 contacts (-69.6/contact) +
2D Compatibility (PS) -13430 + (NN) -2014 + (LL) 532
1D Compatibility (HY) -10400 + (ID) 2350
Total energy: -86222.0 ( -102.52 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1NKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NKI-query.scw
PDB file :
Tito_Scwrl_1NKI.pdb
: