Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKK--ENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYR-LFISHQNSLVEQSSIPVVIAK
3CIS Chain:A ((172-305))
APVLVGVDGSSASELATAIAFDEASRR-NVDLVALHAWSDVDVSEWPGI-DWPAT----QSMAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR
General information:
TITO was launched using:
RESULT:
Template:
3CIS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106421 for 1015 contacts (-104.8/contact) +
2D Compatibility (PS) -14121 + (NN) -6208 + (LL) 800
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -131500.0 ( -129.56 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_3CIS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CIS-query.scw
PDB file :
Tito_Scwrl_3CIS.pdb
: