Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFSQLGGLSGLLDGVKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE--DKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL
1YBX Chain:A ((43-133))
-----INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKIT------
General information:
TITO was launched using:
RESULT:
Template:
1YBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12919 for 537 contacts (-24.1/contact) +
2D Compatibility (PS) -9707 + (NN) -5788 + (LL) 620
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -31394.0 ( -58.46 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_1YBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBX-query.scw
PDB file :
Tito_Scwrl_1YBX.pdb
: