Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC
3SF4 Chain:D ((24-68))
QVDSVQRWMEDLKLMTECECMCVLQA--KPISLEEDAQGDLILAGGP-----
General information:
TITO was launched using:
RESULT:
Template:
3SF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2333 for 129 contacts (-18.1/contact) +
2D Compatibility (PS) -3713 + (NN) -1912 + (LL) 76
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -9632.0 ( -74.67 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_3SF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SF4-query.scw
PDB file :
Tito_Scwrl_3SF4.pdb
: