Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLV-DNLSLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHFQTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCVFCPEQDLLTLAC-----YQKVLQLPYIYNAHPFMAN----QKRFIPNQQEIIMLHFYFVGKPWILPTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS |
| 1LL3 Chain:A ((1-266)) | MTDQAFVTLTTNDAYAKGALVLGSSLKQH--RTS----------------RRLAVLTTPQVSDTMRKALEIVF------DEVITVDILDSG----------------DSAHLTLMKRPEL-GVTLTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG--------------WP---------------------DCFNSGVFVYQPS---VETYNQLLHVASEQGS--FDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKA--FGANAKVVHFLGQTKPWNYTYDTKTKSVRSEMTHPQFLNVWWDIFTTSVVPLLQQFG-L------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LL3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197532 for 2092 contacts (-94.4/contact) +
2D Compatibility (PS) -26586 + (NN) -10545 + (LL) 9720
1D Compatibility (HY) -8000 + (ID) 2500
Total energy: -235443.0 ( -112.54 by residue)
QMean score : 0.410
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