Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGRAFEYRRAAKEKRWDKMSK--VFPKLAKAITLAAKEGGSEPDTNAKLRT--------AILNAK-----AQNMPKDNIDAAIKRASS--------KEGNLSEIT--------YEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQG--ASIVPN-----GSLEFMFNR---KSVFECLKSE-----VENLKLSLEDLEFALIDYGLEELEE-VGDKIIIRGDYN---SFKLLNEGFESLRLPIIKAGLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNIE |
3G8Q Chain:A ((1-278)) | MKVSLAGQTVDVKKILNEIPKRTVTAALLEGGEIVAVEEADDEHAERKLVRRHDVEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGRGLGPYYLARSGVEVVEVHPDEPLGYDPVDRLDVLLTFGGNPYLTEEDVAARVYCLLTGRGFDADIAPAPENLSGRVEIMVTRGDPDEAVELLKEELPVFRIRRFLISGEFDRDELRERILEDIEPRILDPFAVRARIARAGAFSSSREAEVFIGDVLTSVG------REVNLNDPRTVVTVDVLGP------RVSVGVEKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3G8Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6226 for 1670 contacts (-3.7/contact) +
2D Compatibility (PS) -24069 + (NN) -1010 + (LL) 800
1D Compatibility (HY) -11200 + (ID) 2200
Total energy: -43905.0 ( -26.29 by residue)
QMean score : 0.063
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