Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA-NL-VDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNA-PFM-ATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFD-A----KRQTPLLGHIGIYGFHNKEILEELCA-LKPCVLEDTEKLEQL-RALYYQKKILVKIVQ-SESMGIDTKEDLQNALKIFSPNLLKR
3TQD Chain:A ((11-256))
RVIIPARFD---LPGKALVDIAGKPMIQHVYESAIKSGAEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHD-KVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRV-GFLEEYLSWDAC-P-AEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF-------
General information:
TITO was launched using:
RESULT:
Template:
3TQD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156151 for 1826 contacts (-85.5/contact) +
2D Compatibility (PS) -25162 + (NN) -12628 + (LL) 468
1D Compatibility (HY) -9200 + (ID) 3850
Total energy: -206523.0 ( -113.10 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3TQD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQD-query.scw
PDB file :
Tito_Scwrl_3TQD.pdb
: