Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKIN-HLDFKTFKDALSLGKGMMPKY--NLNLEEIQAIYLYITSLGHKDERKDPSKP
1C6R Chain:A ((2-86))
------------------------ADLALGKQTFEA----NCAACHAGGNNSVIPDHTLR----KAAMEQFLQGGFNLEAITYQVENGKGAMPAWSGTLDDDEIAAVAAYVYDQASGDKW------
General information:
TITO was launched using:
RESULT:
Template:
1C6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36762 for 572 contacts (-64.3/contact) +
2D Compatibility (PS) -8779 + (NN) -3579 + (LL) 3004
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -48966.0 ( -85.60 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_1C6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C6R-query.scw
PDB file :
Tito_Scwrl_1C6R.pdb
: