Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MADILSQEEIDALLEVVDENVDIQN--------VQKKDIIPQRSVTL-------YDFKRPNRVS---KEQLRSFRSIHDKMARNL--SSQVSSIMRSIVE--------------IQLHSVDQMTYGEFLMSLPSPTS---------FNVFSMKPM-GGTGVLEINPSIA-----FPMI-DRLLGGKGSAYDQNREFSDIELNLLDTILRQVMQI-LKEVWSPVVEMYP----TIDAKES------SANVVQIVAQNEI--SIMVVLEIIIG-------------HSRGMMNIC-----YPVISIE--------SILSKMGSRDFMLSETNSK-KSRNKELQALLSGVSVDM---------------MVFLGAVELSLKEMLDLDVGD-TIRLNKVAN-DEVSVYVHKKKRYLASVGFQGYRKTIQ-----------IK-EVVYSEKERTKEILEMLEEQRRGKVGDIMKIEEE------- |
| 4GA6 Chain:A ((1-493)) | MKAKIRILDMFSGRYTVLINEEDAKEAKLHPDDLVKIEAGKKAVYGSVALSNLVGKGEVGISRDVLDLHNFSEGETVSVIPAGTPESVRYIKKKMHGEKLRKVEIEAIVRDIVDRKLRDIEISSFVTALEINGLDMDEIAALTIAMAETGDMLDIDRKPIMDVHSIGGVPGNKTNILVVPIVAAAGLTIPKTSSRAITSAAGTADVVEVFADVSFS-LDEIKRIVEKVGACLVWGGALNLAPADDITIKAERALSIDPTGLMLASIMSKKYAMGSQYVLIDIPTGKGVKVETVEEARSLARDFIELGKRLGQYVEVAITYGGQPIGHTVGPALEAREALSALMTGKGPGSLIEKATGLAGILLEMGGVAPAGTGKKMAKEILESGKAWEKMKEIIEAQGGDPNIKPEEIPIGDKTYTFTAATSGYVTAIDNRAITAIARAAGAPEDKGAGIELYVKVGEKVKEGDPLFTIHAEHEARLDQAIVLARRTEPIRIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49982 for 2667 contacts (-18.7/contact) +
2D Compatibility (PS) -36951 + (NN) 5428 + (LL) 176
1D Compatibility (HY) -16000 + (ID) 3350
Total energy: -100679.0 ( -37.75 by residue)
QMean score : 0.270
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