Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIRDIKGLKAANTLSSTYGEIAFKYD--AQIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNSP-FKIAWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
3VV5 Chain:A ((32-256))
--------------------------IKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERAR-AVDFTNPHYCTGGVIVSRKGG--PRTAKDLQGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVG-ELV-FQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK
General information:
TITO was launched using:
RESULT:
Template:
3VV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99424 for 1851 contacts (-53.7/contact) +
2D Compatibility (PS) -24336 + (NN) -12917 + (LL) 2604
1D Compatibility (HY) -10800 + (ID) 2850
Total energy: -147723.0 ( -79.81 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3VV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VV5-query.scw
PDB file :
Tito_Scwrl_3VV5.pdb
: