Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQTLFKEITSKCYVNGNEMKENSSNVLDQ-YFTKPSVALKCFQKACEVIKKYENPDDFIFLEPSAGDGVFYDLFPK--DRRIGIDIEPKRD-------------GFIQCDFLNYKLPVHQKVICLGNPPFGHRGVMALEFINHARNCDFVCFILPM-FFES--QGKGSIKYRVK-GLNLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNRHKEPFSEYIKVFTVSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYQSGIAVVFTSADKVLNAKLKKLFQEIDWTKYASLATNSCYHLGKSHIFQALHDHLDSLKGN |
1QAM Chain:A ((10-182)) | ----------------------------QNFITSKHNIDKIMTNIRLN-------EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFDSI-ADEIYLIVEYGFAKRLLNTKRSLALFLMAEVDISILSMVPREYFHP----KPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNNISFEQFLSLFNSYKLFNK----------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118613 for 1098 contacts (-108.0/contact) +
2D Compatibility (PS) -16663 + (NN) -7434 + (LL) 7084
1D Compatibility (HY) -6400 + (ID) 1300
Total energy: -143326.0 ( -130.53 by residue)
QMean score : 0.457
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