Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKKRVFSGIQPTGQIHLGNYLGAIKHWVELQDEYENLFCIVNSHAITLPIEPIFLKSQTYELVKLLLACGISPKQSGLFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNVAEKFNRDFGNCFKVPEPLIA-KVGARVMGLDDPKVKMSKSHKGANHAIFLLDEPDVIVKKIKKAATDSM-GVIAFDE-TREGVFNLLNIYMLLSDESPEKIEERFRNKGYGDFKKELAEVVIQSLKPIQERYQEISDDE-VKAVLNCGAEKARPLARATYQKAKELMGLI |
| 1I6K Chain:A ((1-325)) | --MKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-KEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKV-GARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTI-RYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1I6K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162132 for 2678 contacts (-60.5/contact) +
2D Compatibility (PS) -34062 + (NN) -12648 + (LL) 644
1D Compatibility (HY) -30400 + (ID) 8350
Total energy: -246948.0 ( -92.21 by residue)
QMean score : 0.512
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