Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKIELLAKFTQIALPNSHPLLKKVLNYAKKHFSQCHMLSSSLLILNDTECFKKNYLLNWVYHALECAHEKDISMHSLEEILQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAEYALFITKHPIAKRFLRQKFSGCVFLETQDELHIRGDSERFWELIVTLNENRIVHNACLDFIYPNGFGKDSYTTMAERKLKECYKALGFIKHENFSEVKKRYLELAKTYHPDLCDLKEKKALYAKRFAIIQEAYSHIKKHA |
2DN9 Chain:A ((5-63)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD---PKAKEKFSQLAEAYEVLSDEV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DN9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20601 for 356 contacts (-57.9/contact) +
2D Compatibility (PS) -6354 + (NN) -4249 + (LL) 16428
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -17276.0 ( -48.53 by residue)
QMean score : 0.690
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