Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVK----RNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSI-----KDYMNKALKDLKKGMTHTHAKQ
1YHU Chain:D ((1-149))
---------AASCTTEDRREMQLMWGNVWSAQFTGRRIAIAQAVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDPATLNEQLSHLATQHK-----------ARSGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITTGMTEPLPA-
General information:
TITO was launched using:
RESULT:
Template:
1YHU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1287 for 976 contacts (-1.3/contact) +
2D Compatibility (PS) -14634 + (NN) -10071 + (LL) 2096
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -29346.0 ( -30.07 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_1YHU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YHU-query.scw
PDB file :
Tito_Scwrl_1YHU.pdb
: