Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAEPKYAIIINDIKRLISDGTFKPGEKIYSEDELKKKYNVSNTTVVRALHELVRAGILARYQGKGTYVSKSIINEEVIFNEYTTVPNGRFNRKTKITNEHTKVVAINEIQ-DARIAKKLQIPPENMIVHFQRIRLIDDLPWTVQNNYMAKSNLINVDLTNFEKFNSLSEVIKELYGINILHEAMKERIEVEFPVKDKNNFKLLEIDTELPLYHIERITYVPEGQPYEYIESYLRHNFYSIEIEKKKQ |
3F8M Chain:A ((14-241)) | ---LKHQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGRTTVVARPKIRQP--L-GMGSYTEAA---KAQGLSAGRILVAWSDLTADEVLAGVLGVDVGAPVLQLERVLTTDGVRVGLETTKLPAQRYPGLRETF-DHEASLYAEIRS-RGIAF--TRTVDTID--TALPDAREAALLGADARTPMFLLNRVSYDQDDVAIEQRRSLYRGDRMTFTAVMHA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3F8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54618 for 1643 contacts (-33.2/contact) +
2D Compatibility (PS) -24123 + (NN) -4607 + (LL) 1936
1D Compatibility (HY) -12000 + (ID) 2200
Total energy: -95612.0 ( -58.19 by residue)
QMean score : 0.440
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