Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
1RK8 Chain:C ((3-35))
----------------------------------TYLQSSEGKFI--PATKRPDGTWRK-ARRVKDGYVP--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2125 for 139 contacts (-15.3/contact) +
2D Compatibility (PS) -3621 + (NN) -3473 + (LL) 6284
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -5435.0 ( -39.10 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1RK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RK8-query.scw
PDB file :
Tito_Scwrl_1RK8.pdb
: