Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------MSDYLVKALAY---DGMARVYAAVTTETIKEAQRRHDTWSVSSAALGRTMTGTLFLGAMQK----EDQKITVKIEGDGPIGPIVADSNA--QGQIRGYVTNP---------------HVHFSELNEAGKLD-VRRGVGTSGMLSVVKDLGFGENFTGQTPIVSGEIG-----EDFTYYLATS------EQINSSVGVGVLVNPDD------------------TIEAAGGFM-----------LQLLPGATDEIIDEIEKNLMALP-----TVSRMIEAG-ETPESILAKLAGG--EDKLQILEKIPVSFECNCSKERFGSAIISLGKEEIRSMIEEDHGAEAECHFCRNTYDFSE-EELKTLYEEAK |
| 1QM4 Chain:A ((17-396)) | GAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSP-----EDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDL-----RPGVIVRDLDLKKPIYQKTACYG-----HFGRSEFPWEVPKKLVF------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37637 for 1928 contacts (-19.5/contact) +
2D Compatibility (PS) -28576 + (NN) -7249 + (LL) 1640
1D Compatibility (HY) -4800 + (ID) 2500
Total energy: -79122.0 ( -41.04 by residue)
QMean score : 0.159
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