Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
3HSJ Chain:A ((3-134))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLAAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3HSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104108 for 940 contacts (-110.8/contact) +
2D Compatibility (PS) -13917 + (NN) -5059 + (LL) 2208
1D Compatibility (HY) -10800 + (ID) 2750
Total energy: -134426.0 ( -143.01 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3HSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HSJ-query.scw
PDB file :
Tito_Scwrl_3HSJ.pdb
: