Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSA-FNHT--GEPSKATPITQIA--SETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTL------TNKKVLYISGEES--IKQTKLRAERLQVS----GDNLYVYAETNLEAV-------QETIDFVKPDFVVIDSIQTVYHSDVTS--AAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKALPD |
| 3LDA Chain:A ((98-396)) | ----------KLRESGLHTAEAVAYAPR----KDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-----GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV---------NIMAYSSTTRLGFKKGK-GCQRLCKVVDSPCLPE-AECVFAIYEDGVGDPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117443 for 1949 contacts (-60.3/contact) +
2D Compatibility (PS) -26316 + (NN) -6788 + (LL) 14520
1D Compatibility (HY) -9200 + (ID) 2300
Total energy: -147527.0 ( -75.69 by residue)
QMean score : 0.477
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