Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGARILAKIPDDAYVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSNERISFGRLTLPH-QLMRLVLVEQVYRAFRIVRGEPYHK
1OY5 Chain:A ((83-169))
---------------------------------------------------------------------KPFVLITEPWGEKLNQ-KLVNELSK-----KERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGEIVALAVIDAVSR------------
General information:
TITO was launched using:
RESULT:
Template:
1OY5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33507 for 460 contacts (-72.8/contact) +
2D Compatibility (PS) -7904 + (NN) -4955 + (LL) 7432
1D Compatibility (HY) -5600 + (ID) 850
Total energy: -45384.0 ( -98.66 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_1OY5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OY5-query.scw
PDB file :
Tito_Scwrl_1OY5.pdb
: